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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ChIP-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
Assay category
65
DNA binding
10
DNA accessibility
7
DNA methylation
Target of assay
59
transcription factor
20
RNA binding protein
16
recombinant protein
6
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
666
February, 2021
376
November, 2017
341
August, 2017
315
August, 2021
280
October, 2019
194
May, 2020
193
May, 2021
163
June, 2019
120
July, 2018
115
May, 2019
107
February, 2023
December, 2017
82
November, 2018
80
April, 2019
77
July, 2019
73
October, 2018
66
May, 2022
63
March, 2020
61
November, 2019
47
September, 2023
40
May, 2024
37
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
82
bam
82
fastq
75
bigWig
68
bed narrowPeak
68
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
Organism
82
Homo sapiens
Biosample type
56
cell line
26
tissue
primary cell
Organ
48
liver
15
blood
15
bodily fluid
9
spleen
7
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
82
AMP
Genome assembly (visualization)
74
GRCh38
66
hg19
Lab
82
AMP-T2D consortium
Audit category:
1
missing controlled_by
Audit category:
inconsistent control read length
4
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
biosample_type!
primary cell
files.file_type!
bed bed3
month_released!
December, 2017
BIOSAMPLE
ASSAY
82 results
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ChIP-seq
DNase-seq
WGBS
FAIRE-seq
cell line
HepG2
40
1
GM12878
15
tissue
spleen
6
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
brain
2
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