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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
29
ChIP-seq
6
Hi-C
5
total RNA-seq
4
RRBS
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
small RNA-seq
Assay category
33
DNA accessibility
29
DNA binding
7
Transcription
6
3D chromatin structure
5
DNA methylation
Target of assay
25
histone
25
histone modification
16
broad histone mark
9
narrow histone mark
4
control
Date released
32
June, 2019
26
August, 2017
7
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
1
January, 2018
1
May, 2022
Available data
57
bigWig
51
bed narrowPeak
45
bed broadPeak
44
bam
38
bigBed narrowPeak
33
bed bed3+
32
bigBed broadPeak
15
tagAlign
7
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
txt
Organism
81
Homo sapiens
Biosample type
81
tissue
primary cell
Organ
750
liver
639
connective tissue
589
pancreas
489
adipose tissue
380
heart
265
brain
256
kidney
199
blood vessel
199
vasculature
139
artery
122
limb
117
epithelium
81
musculature of body
70
bone element
61
blood
61
bodily fluid
56
eye
43
nerve
34
embryo
25
spleen
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
81
AMP
Genome assembly (visualization)
60
hg19
42
GRCh38
Lab
81
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
audit.WARNING.category!
inconsistent control read length
biosample_type!
primary cell
files.file_type!
ibed
txt
BIOSAMPLE
ASSAY
81 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
RRBS
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
muscle of leg
13
7
1
muscle of arm
17
gastrocnemius medialis
4
1
psoas muscle
2
2
1
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