Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
287
ChIP-seq
Assay category
287
DNA binding
Target of assay
212
histone
212
histone modification
122
narrow histone mark
90
broad histone mark
66
control
9
transcription factor
Date released
73
August, 2017
67
November, 2017
50
May, 2020
49
October, 2019
20
August, 2021
14
October, 2017
8
February, 2021
6
May, 2021
Available data
2732
bam
2505
bigWig
1473
bed narrowPeak
1330
tsv
903
bigBed narrowPeak
898
fastq
287
tagAlign
260
bed broadPeak
226
bed bed3+
223
bigBed broadPeak
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
280
Homo sapiens
Biosample type
238
tissue
primary cell
40
in vitro differentiated cells
9
cell line
Organ
118
brain
71
liver
22
connective tissue
19
pancreas
15
musculature of body
8
adipose tissue
6
artery
6
blood vessel
6
heart
6
vasculature
3
epithelium
1
pituitary gland
Project
287
AMP
Genome assembly (visualization)
139
GRCh38
128
hg19
Lab
287
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
inconsistent control read length
1
inconsistent assembly
audit.WARNING.category!
inconsistent control read length
biosample_type!
primary cell
files.file_type!
ibed
txt
BIOSAMPLE
ASSAY
287 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
tissue
liver
70
substantia nigra
16
caudate nucleus
15
layer of hippocampus
15
skeletal muscle tissue
15
+ See 43 more…
in vitro differentiated cells
neural progenitor cell
20
adipocyte
14
cardiomyocytes
3
pancreatic PP cell
3
cell line
smooth muscle cell of the coronary artery
6
iPSC derived cell line
2
HepG2
1
See all biosamples
Download