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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
ChIP-seq
15
total RNA-seq
Assay category
398
DNA binding
15
Transcription
Target of assay
231
transcription factor
88
histone
88
histone modification
76
control
65
recombinant protein
51
broad histone mark
37
narrow histone mark
29
RNA binding protein
9
chromatin remodeller
2
other context
2
other post-translational modification
Date released
667
February, 2021
376
November, 2017
341
August, 2017
315
August, 2021
280
October, 2019
194
May, 2020
193
May, 2021
163
June, 2019
120
July, 2018
117
February, 2023
115
May, 2019
83
December, 2017
82
November, 2018
80
April, 2019
77
July, 2019
73
October, 2018
66
May, 2022
63
March, 2020
61
November, 2019
47
September, 2023
40
May, 2024
37
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
399
bam
333
bigWig
331
fastq
302
bed narrowPeak
287
bigBed narrowPeak
67
tagAlign
51
bed broadPeak
45
bigBed broadPeak
15
tsv
3
tar
Organism
413
Homo sapiens
Biosample type
294
cell line
82
tissue
37
in vitro differentiated cells
primary cell
Organ
294
liver
82
brain
13
embryo
Project
413
AMP
Genome assembly (visualization)
286
GRCh38
280
hg19
Lab
413
AMP-T2D consortium
Audit category:
7
missing controlled_by
Audit category:
inconsistent control read length
4
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
biosample_type!
primary cell
month_released!
September, 2020
BIOSAMPLE
ASSAY
413 results
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Clear Filters
ChIP-seq
total RNA-seq
cell line
HepG2
294
tissue
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
middle frontal area 46
14
+ See 1 more…
in vitro differentiated cells
pancreatic endoderm
9
4
embryonic stem cell
3
2
endocrine cell
3
2
posterior foregut
3
2
primitive gut cell
3
2
+ See 2 more…
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