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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
118
ChIP-seq
93
single cell RNA-seq
25
DNase-seq
19
total RNA-seq
15
ATAC-seq
8
WGBS
3
Hi-C
3
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
118
DNA binding
113
Transcription
40
DNA accessibility
9
DNA methylation
3
3D chromatin structure
Target of assay
93
histone
93
histone modification
57
broad histone mark
36
narrow histone mark
14
control
11
transcription factor
9
RNA binding protein
Date released
92
August, 2021
57
April, 2019
40
May, 2024
25
June, 2019
19
July, 2019
16
May, 2019
9
February, 2023
8
February, 2021
8
October, 2019
7
March, 2020
3
May, 2021
2
February, 2020
Available data
152
bigWig
140
bed narrowPeak
133
bam
111
tsv
83
bigBed narrowPeak
25
bed bed3+
25
bed broadPeak
25
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
4
bed bed3
4
txt
3
bedpe bed3+
3
hic
Organism
286
Homo sapiens
Biosample type
285
tissue
primary cell
1
in vitro differentiated cells
Organ
750
liver
639
connective tissue
595
pancreas
489
adipose tissue
380
heart
318
kidney
265
brain
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
117
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
34
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
286
AMP
Genome assembly (visualization)
159
GRCh38
120
hg19
Lab
246
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
audit.WARNING.category!
inconsistent control read length
biosample_type!
primary cell
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
286 results
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ChIP-seq
single cell RNA-seq
DNase-seq
total RNA-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
35
18
3
3
2
4
1
1
1
left cardiac atrium
40
18
1
heart
14
1
18
4
1
1
1
heart right ventricle
13
17
1
1
2
1
1
right cardiac atrium
6
18
1
1
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in vitro differentiated cells
cardiac fibroblast
1
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