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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
138
ChIP-seq
93
single cell RNA-seq
26
DNase-seq
15
total RNA-seq
10
WGBS
4
ATAC-seq
4
pCHi-C
3
Hi-C
1
RRBS
1
small RNA-seq
Assay category
138
DNA binding
109
Transcription
30
DNA accessibility
11
DNA methylation
3
3D chromatin structure
Target of assay
99
histone
99
histone modification
61
broad histone mark
38
narrow histone mark
22
control
17
transcription factor
9
RNA binding protein
3
other context
3
other post-translational modification
Date released
92
August, 2021
57
April, 2019
40
May, 2024
25
June, 2019
19
July, 2019
16
May, 2019
9
November, 2018
8
March, 2020
8
October, 2019
7
December, 2018
7
January, 2019
3
May, 2021
2
February, 2020
1
February, 2023
1
October, 2017
Available data
168
bigWig
149
bam
146
bed narrowPeak
112
tsv
96
bigBed narrowPeak
26
bed bed3+
26
bed broadPeak
26
bigBed broadPeak
24
fastq
9
bed bedMethyl
9
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
295
Homo sapiens
Biosample type
294
tissue
primary cell
1
in vitro differentiated cells
Organ
750
liver
639
connective tissue
595
pancreas
489
adipose tissue
380
heart
318
kidney
265
brain
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
117
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
34
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
295
AMP
Genome assembly (visualization)
167
GRCh38
122
hg19
Lab
255
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
audit.WARNING.category!
inconsistent control read length
biosample_type!
primary cell
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
295 results
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ChIP-seq
single cell RNA-seq
DNase-seq
total RNA-seq
WGBS
ATAC-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
tissue
heart left ventricle
35
18
3
3
4
2
1
1
1
left cardiac atrium
40
18
1
heart
14
1
18
4
1
1
1
heart right ventricle
13
17
1
1
2
1
1
right cardiac atrium
6
18
1
1
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in vitro differentiated cells
cardiac fibroblast
1
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