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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
DNase-seq
96
ChIP-seq
41
single cell RNA-seq
16
total RNA-seq
7
WGBS
3
ATAC-seq
1
FAIRE-seq
Assay category
200
DNA accessibility
96
DNA binding
57
Transcription
7
DNA methylation
Target of assay
63
transcription factor
24
RNA binding protein
19
histone
19
histone modification
16
recombinant protein
14
control
11
narrow histone mark
8
broad histone mark
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
715
February, 2021
399
May, 2021
395
August, 2017
385
November, 2017
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
83
November, 2018
82
December, 2017
80
April, 2019
75
October, 2018
73
September, 2018
61
November, 2019
60
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
37
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
4
August, 2018
4
October, 2022
3
June, 2018
3
March, 2023
1
August, 2022
Available data
300
bam
288
bigWig
278
bed narrowPeak
278
bigBed narrowPeak
196
bed bed3+
196
bed broadPeak
196
bigBed broadPeak
124
fastq
19
zippedFastqFolder
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
360
Homo sapiens
Biosample type
189
tissue
115
primary cell
56
cell line
Organ
81
kidney
50
liver
43
musculature of body
39
epithelium
35
heart
32
brain
32
limb
30
pancreas
19
connective tissue
18
ureter
15
blood
15
bodily fluid
9
spleen
7
eye
7
vasculature
5
blood vessel
2
adipose tissue
2
artery
Project
301
AMP
59
HPAP
Genome assembly (visualization)
287
GRCh38
253
hg19
Lab
301
AMP-T2D consortium
59
Klaus Kaestner, Upenn
Audit category:
26
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
inconsistent control read length
4
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
biosample_type!
stem cell
BIOSAMPLE
ASSAY
360 results
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Clear Filters
DNase-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
WGBS
ATAC-seq
FAIRE-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 37 more…
primary cell
Langerhans cell
40
pancreatic alpha cell
15
2
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
mesenchymal stem cell
7
+ See 21 more…
cell line
HepG2
40
1
GM12878
15
See all biosamples
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