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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
total RNA-seq
27
snATAC-seq
12
single cell RNA-seq
6
ATAC-seq
6
WGBS
2
ChIP-seq
2
pCHi-C
Assay category
61
Transcription
33
DNA accessibility
6
DNA methylation
2
DNA binding
Target of assay
1
control
1
transcription factor
Date released
359
May, 2021
300
November, 2017
148
May, 2020
134
May, 2022
116
August, 2017
110
February, 2023
104
February, 2021
90
August, 2021
73
September, 2018
59
September, 2020
57
November, 2018
53
June, 2019
51
October, 2019
48
July, 2018
43
April, 2018
37
February, 2018
35
December, 2017
28
December, 2018
27
July, 2019
23
January, 2019
23
March, 2020
21
November, 2019
12
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
March, 2023
5
May, 2019
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
Available data
55
tsv
54
bam
51
bigWig
45
fastq
4
bed bedgraph
3
bed narrowPeak
2
bed bed3
2
bed bed3+
2
tagAlign
Organism
104
Homo sapiens
Biosample type
tissue
48
primary cell
30
cell line
26
in vitro differentiated cells
Organ
66
artery
blood vessel
66
heart
66
vasculature
32
epithelium
32
pancreas
11
connective tissue
2
liver
Project
59
AMP
45
HPAP
Genome assembly (visualization)
58
hg19
52
GRCh38
Lab
59
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
44
inconsistent ontology term
27
audit script error
1
inconsistent replicate
audit.WARNING.category!
inconsistent control read length
biosample_type!
tissue
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
104 results
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Clear Filters
total RNA-seq
snATAC-seq
single cell RNA-seq
ATAC-seq
WGBS
ChIP-seq
pCHi-C
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
1
cell line
EndoC_BH1
26
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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