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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
263
total RNA-seq
97
single cell RNA-seq
13
ATAC-seq
6
WGBS
5
pCHi-C
2
small RNA-seq
Assay category
362
Transcription
13
DNA accessibility
6
DNA methylation
Target of assay
3
control
Date released
85
February, 2021
56
May, 2021
48
July, 2018
46
May, 2020
43
April, 2018
26
September, 2018
18
July, 2019
17
August, 2021
12
February, 2023
9
March, 2020
6
October, 2019
5
December, 2019
5
January, 2019
4
November, 2020
3
August, 2018
June, 2018
2
October, 2018
1
November, 2019
Available data
1157
bam
1101
bigWig
802
fastq
670
bed narrowPeak
439
bigBed narrowPeak
386
tsv
153
zippedFastqFolder
109
tagAlign
95
bed broadPeak
95
bigBed broadPeak
40
bed bed3+
11
bed bedMethyl
11
bigBed bedMethyl
8
hic
6
bedpe bed3+
5
hdf5
4
tar
3
cool
2
bed bed3
2
csv
1
txt
1
vcf
Organism
386
Homo sapiens
Biosample type
1076
tissue
267
primary cell
131
in vitro differentiated cells
119
cell line
4
stem cell
Organ
150
epithelium
141
pancreas
56
heart
54
artery
54
blood vessel
54
vasculature
20
liver
15
connective tissue
12
kidney
8
embryo
3
brain
2
adipose tissue
2
musculature of body
1
mammary gland
1
pericardium
Project
282
AMP
98
T1D
6
HPAP
Genome assembly (visualization)
354
hg19
353
GRCh38
Lab
275
AMP-T2D consortium
96
Kyle Gaulton, UCSD
9
Bing Ren, UCSD
6
Klaus Kaestner, Upenn
Audit category:
55
inconsistent ontology term
audit.WARNING.category!
inconsistent control read length
month_released!
June, 2018
BIOSAMPLE
ASSAY
386 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
pCHi-C
small RNA-seq
primary cell
monocyte
53
pancreatic alpha cell
10
12
6
pancreatic beta cell
10
12
pancreatic acinar cell
4
12
pancreatic ductal cell
4
9
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cell line
smooth muscle cell of the coronary artery
52
EndoC_BH1
33
1
HepG2
14
1
H1-hESC
8
RCC 7860 vector
1
1
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