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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
620
ChIP-seq
360
total RNA-seq
229
ATAC-seq
181
single cell RNA-seq
56
snATAC-seq
48
WGBS
33
DNase-seq
23
pCHi-C
14
Hi-C
10
RRBS
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
MeRIP-seq
2
Capture-C
2
HiChIP
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
FAIRE-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
620
DNA binding
545
Transcription
319
DNA accessibility
59
DNA methylation
14
3D chromatin structure
1
DNA sequencing
Target of assay
356
transcription factor
259
histone
259
histone modification
135
broad histone mark
124
narrow histone mark
control
88
recombinant protein
69
RNA binding protein
20
chromatin remodeller
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
244
November, 2017
224
May, 2021
148
May, 2020
141
February, 2021
134
May, 2022
94
February, 2023
73
September, 2018
59
September, 2020
54
November, 2018
52
October, 2019
48
July, 2018
47
June, 2019
43
April, 2018
43
August, 2021
41
August, 2017
28
December, 2018
28
July, 2019
20
January, 2019
14
November, 2019
12
March, 2020
9
November, 2020
8
January, 2021
7
August, 2020
5
December, 2019
5
September, 2017
4
May, 2019
4
October, 2022
3
August, 2018
June, 2018
3
March, 2023
2
October, 2018
1
January, 2018
Available data
1078
bigWig
1049
bam
724
fastq
670
bed narrowPeak
439
bigBed narrowPeak
383
tsv
153
zippedFastqFolder
103
tagAlign
95
bed broadPeak
95
bigBed broadPeak
40
bed bed3+
11
bed bedMethyl
11
bigBed bedMethyl
8
hic
6
bedpe bed3+
5
hdf5
4
tar
3
cool
2
bed bed3
2
csv
1
txt
1
vcf
Organism
1594
Homo sapiens
Biosample type
2584
tissue
1045
primary cell
553
cell line
340
in vitro differentiated cells
7
stem cell
Organ
454
epithelium
410
pancreas
328
liver
97
vasculature
92
blood vessel
75
heart
66
artery
63
blood
63
bodily fluid
49
kidney
36
connective tissue
20
vein
15
brain
12
musculature of body
8
embryo
4
eye
2
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
1058
AMP
324
HPAP
213
T1D
2
community
1
ITG
Genome assembly (visualization)
1101
hg19
967
GRCh38
Lab
997
AMP-T2D consortium
324
Klaus Kaestner, Upenn
241
Kyle Gaulton, UCSD
30
Bing Ren, UCSD
3
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
1
ITG
Audit category:
132
inconsistent ontology term
31
audit script error
1
inconsistent control
1
inconsistent replicate
Audit category:
52
missing controlled_by
Audit category:
inconsistent control read length
9
inconsistent control run_type
3
inconsistent assembly
audit.WARNING.category!
inconsistent control read length
month_released!
June, 2018
target.investigated_as!
control
BIOSAMPLE
ASSAY
1598 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
STARR-seq
CRISPR genome editing followed by DNA sequencing
MeRIP-seq
Capture-C
HiChIP
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
DNAme array
FAIRE-seq
MPRA
...and 3 more
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
5
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
5
21
23
12
16
1
exocrine cell
39
+ See 92 more…
cell line
HepG2
292
14
1
1
2
2
2
EndoC_BH1
13
33
19
1
3
3
2
2
1
smooth muscle cell of the coronary artery
4
52
8
GM12878
54
1
Panc1
7
1
1
+ See 14 more…
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