Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
182
ChIP-seq
136
total RNA-seq
42
ATAC-seq
9
pCHi-C
5
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNase-seq
Assay category
182
DNA binding
140
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
105
histone
105
histone modification
53
narrow histone mark
51
broad histone mark
39
transcription factor
38
control
11
RNA binding protein
1
chromatin remodeller
Date released
132
May, 2021
62
August, 2017
42
August, 2021
37
February, 2018
35
December, 2017
26
February, 2021
16
February, 2023
12
March, 2020
8
October, 2019
5
January, 2018
5
November, 2019
2
December, 2019
2
March, 2023
1
August, 2018
Available data
275
bam
243
bigWig
135
tsv
126
fastq
115
bed narrowPeak
40
tagAlign
18
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
383
Homo sapiens
Biosample type
2770
tissue
1083
primary cell
636
cell line
377
in vitro differentiated cells
8
stem cell
Organ
92
connective tissue
26
embryo
23
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
383
AMP
2
community
Genome assembly (visualization)
281
hg19
249
GRCh38
5
hg18
Lab
329
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
2
Anna Gloyn, Oxford
Audit category:
115
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
inconsistent control read length
audit.WARNING.category!
inconsistent control read length
lab.title!
Stephen Parker, UMich
BIOSAMPLE
ASSAY
385 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
61
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
+ See 31 more…
stem cell
SB Ad3.1
1
1
hESC
1
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
+ See 1 more…
See all biosamples
Download