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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
141
ChIP-seq
136
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
141
DNA binding
138
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
79
histone
79
histone modification
41
narrow histone mark
37
broad histone mark
35
transcription factor
27
control
11
RNA binding protein
1
chromatin remodeller
Date released
126
May, 2021
48
August, 2017
37
February, 2018
34
December, 2017
26
February, 2021
22
August, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
274
bam
242
bigWig
131
tsv
124
fastq
115
bed narrowPeak
tagAlign
17
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
337
Homo sapiens
Biosample type
2533
tissue
979
primary cell
625
cell line
337
in vitro differentiated cells
8
stem cell
Organ
77
connective tissue
26
embryo
20
epithelium
15
liver
1
adipose tissue
1
heart
Project
337
AMP
Genome assembly (visualization)
263
hg19
230
GRCh38
4
hg18
Lab
283
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
111
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
inconsistent control read length
audit.WARNING.category!
inconsistent control read length
files.file_type!
hdf5
tagAlign
organ_slims!
mammary gland
BIOSAMPLE
ASSAY
337 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
47
5
8
1
1
cardiomyocytes
59
embryonic stem cell
40
7
6
1
cardiac precursors (cardiac muscle cell)
19
1
1
pancreatic endoderm
16
4
1
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