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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
105
ChIP-seq
Assay category
105
DNA binding
Target of assay
105
histone
105
histone modification
53
narrow histone mark
51
broad histone mark
39
transcription factor
37
control
11
RNA binding protein
1
chromatin remodeller
Date released
37
August, 2017
21
May, 2021
19
December, 2017
14
August, 2021
14
February, 2018
Available data
72
bam
71
bed narrowPeak
71
bigWig
58
fastq
26
tagAlign
12
bigBed narrowPeak
4
bed bed3+
Organism
105
Homo sapiens
Biosample type
621
tissue
232
primary cell
105
in vitro differentiated cells
27
cell line
Organ
37
connective tissue
14
epithelium
12
liver
10
embryo
1
pancreas
Project
105
AMP
Genome assembly (visualization)
71
GRCh38
70
hg19
Lab
85
AMP-T2D consortium
20
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
inconsistent control read length
audit.WARNING.category!
inconsistent control read length
files.file_type!
tagAlign bed3+
BIOSAMPLE
ASSAY
105 results
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ChIP-seq
in vitro differentiated cells
adipocyte
37
embryonic stem cell
22
neural progenitor cell
14
hepatocyte
12
pancreatic endoderm
9
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