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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
11
ChIP-seq
4
ATAC-seq
2
Capture-C
Assay category
11
DNA binding
4
DNA accessibility
Target of assay
5
control
4
histone
4
histone modification
4
narrow histone mark
2
transcription factor
Date released
8
December, 2017
4
February, 2023
3
August, 2017
2
August, 2021
Available data
274
bam
242
bigWig
131
tsv
124
fastq
115
bed narrowPeak
40
tagAlign
17
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
17
Homo sapiens
Biosample type
205
tissue
37
primary cell
17
in vitro differentiated cells
3
cell line
1
stem cell
Organ
9
connective tissue
2
embryo
Project
17
AMP
Genome assembly (visualization)
17
hg19
11
GRCh38
Lab
15
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
Audit category:
inconsistent control read length
audit.WARNING.category!
inconsistent control read length
files.file_type!
csv
month_released!
May, 2019
BIOSAMPLE
ASSAY
17 results
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ChIP-seq
ATAC-seq
Capture-C
in vitro differentiated cells
adipocyte
3
1
1
Posterior foregut
2
definitive endodermal cell
2
immature adipocyte
2
pancreatic endoderm
2
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