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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
162
ChIP-seq
130
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
Hi-C
3
GRO-seq
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
162
DNA binding
132
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
95
histone
95
histone modification
48
broad histone mark
46
narrow histone mark
37
transcription factor
30
control
11
RNA binding protein
1
chromatin remodeller
Date released
130
May, 2021
62
August, 2017
42
August, 2021
26
February, 2021
24
December, 2017
24
February, 2018
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
3
January, 2018
2
December, 2019
1
August, 2018
Available data
249
bam
224
bigWig
125
tsv
104
bed narrowPeak
100
fastq
40
tagAlign
17
bigBed narrowPeak
15
bed bed3+
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
351
Homo sapiens
Biosample type
2547
tissue
1074
primary cell
351
in vitro differentiated cells
334
cell line
8
stem cell
Organ
91
connective tissue
embryo
23
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
351
AMP
Genome assembly (visualization)
262
hg19
230
GRCh38
3
hg18
Lab
297
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
109
inconsistent ontology term
2
audit script error
Audit category:
5
missing controlled_by
Audit category:
inconsistent control read length
audit.WARNING.category!
inconsistent control read length
lab.title!
Katalin Susztak, Upenn
month_released!
November, 2017
organ_slims!
embryo
BIOSAMPLE
ASSAY
351 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
Hi-C
GRO-seq
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
61
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
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