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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
181
ChIP-seq
136
total RNA-seq
42
ATAC-seq
4
GRO-seq
4
Hi-C
4
pCHi-C
2
Capture-C
1
DNase-seq
Assay category
181
DNA binding
136
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
105
histone
105
histone modification
53
narrow histone mark
51
broad histone mark
39
transcription factor
37
control
11
RNA binding protein
1
chromatin remodeller
Date released
132
May, 2021
62
August, 2017
42
August, 2021
37
February, 2018
34
December, 2017
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
December, 2019
August, 2018
Available data
274
bam
242
bigWig
129
tsv
123
fastq
115
bed narrowPeak
40
tagAlign
17
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
6
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
374
Homo sapiens
Biosample type
2767
tissue
1075
primary cell
636
cell line
374
in vitro differentiated cells
8
stem cell
Organ
90
connective tissue
26
embryo
23
epithelium
15
liver
3
pancreas
1
heart
Project
374
AMP
Genome assembly (visualization)
280
hg19
248
GRCh38
4
hg18
Lab
320
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
112
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
inconsistent control read length
audit.WARNING.category!
inconsistent control read length
month_released!
August, 2018
December, 2019
organ_slims!
large intestine
BIOSAMPLE
ASSAY
374 results
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ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
Hi-C
pCHi-C
Capture-C
DNase-seq
in vitro differentiated cells
adipocyte
61
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
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