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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
465
total RNA-seq
86
ChIP-seq
8
ATAC-seq
8
DNase-seq
6
WGBS
3
pCHi-C
3
small RNA-seq
2
single cell RNA-seq
1
Hi-C
1
RNA microarray
1
RRBS
Assay category
470
Transcription
86
DNA binding
16
DNA accessibility
7
DNA methylation
1
3D chromatin structure
Target of assay
41
histone
41
histone modification
27
control
24
broad histone mark
18
transcription factor
17
narrow histone mark
6
RNA binding protein
Date released
447
February, 2021
57
August, 2017
23
October, 2018
18
July, 2019
18
June, 2019
6
November, 2020
April, 2018
2
February, 2020
2
July, 2018
2
October, 2019
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2021
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
532
bam
511
bigWig
470
tsv
45
fastq
30
bed narrowPeak
25
bigBed narrowPeak
14
bed bed3+
9
bed broadPeak
8
bigBed broadPeak
8
tagAlign
3
bed bedMethyl
3
bigBed bedMethyl
1
bed bed3
1
hdf5
Organism
583
Homo sapiens
Biosample type
547
tissue
91
in vitro differentiated cells
37
primary cell
1
stem cell
Organ
803
pancreas
584
connective tissue
490
adipose tissue
384
epithelium
374
liver
335
kidney
326
heart
286
brain
170
vasculature
164
blood vessel
159
bone element
122
limb
96
musculature of body
75
artery
61
eye
43
nerve
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
583
AMP
1
T1D
Genome assembly (visualization)
514
hg19
510
GRCh38
Lab
583
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
14
inconsistent ontology term
Audit category:
12
missing controlled_by
audit.WARNING.category!
inconsistent control read length
month_released!
April, 2018
BIOSAMPLE
ASSAY
584 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
small RNA-seq
single cell RNA-seq
Hi-C
RNA microarray
RRBS
tissue
adipose tissue
382
2
3
3
1
bone tissue
58
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
2
1
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primary cell
cardiac fibroblast
5
3
1
osteoblast
5
2
1
1
mesenchymal stem cell
7
brain pericyte
1
1
mesenchymal stem cell of adipose
1
1
+ See 7 more…
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