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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
271
ChIP-seq
245
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
16
pCHi-C
10
RRBS
4
DNase-seq
2
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
434
Transcription
271
DNA binding
261
DNA accessibility
58
DNA methylation
2
3D chromatin structure
Target of assay
229
histone
229
histone modification
121
broad histone mark
108
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
204
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
54
August, 2017
48
July, 2018
47
February, 2021
43
April, 2018
32
October, 2019
31
June, 2019
27
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
June, 2018
2
October, 2018
1
August, 2021
1
March, 2023
1
November, 2018
Available data
608
bigWig
604
bam
404
fastq
290
bed narrowPeak
270
tsv
153
zippedFastqFolder
108
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
1042
Homo sapiens
Biosample type
2549
tissue
1042
primary cell
603
cell line
353
in vitro differentiated cells
7
stem cell
Organ
377
epithelium
339
pancreas
31
connective tissue
28
vasculature
26
kidney
24
blood vessel
19
vein
13
brain
13
musculature of body
10
heart
8
blood
8
bodily fluid
8
liver
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
516
AMP
321
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
589
hg19
501
GRCh38
Lab
483
AMP-T2D consortium
321
Klaus Kaestner, Upenn
237
Kyle Gaulton, UCSD
1
ITG
Audit category:
51
inconsistent ontology term
28
audit script error
Audit category:
44
missing controlled_by
Audit category:
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
files.file_type!
bed bed3+
bedpe bed3+
month_released!
December, 2018
BIOSAMPLE
ASSAY
1042 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
RRBS
DNase-seq
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
11
52
35
12
31
Langerhans cell
85
48
pancreatic beta cell
11
21
23
12
16
exocrine cell
39
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