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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
2
ATAC-seq
2
DNase-seq
2
total RNA-seq
1
FAIRE-seq
1
Hi-C
Assay category
24
DNA binding
5
DNA accessibility
2
Transcription
1
3D chromatin structure
Target of assay
21
histone
21
histone modification
12
broad histone mark
9
narrow histone mark
3
control
Date released
204
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
54
August, 2017
48
July, 2018
47
February, 2021
43
April, 2018
32
October, 2019
31
June, 2019
27
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
November, 2018
Available data
31
bam
23
bigWig
21
bed narrowPeak
13
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
bed bed3+
2
tsv
1
hic
1
tar
Organism
32
Homo sapiens
Biosample type
238
tissue
32
primary cell
28
cell line
8
in vitro differentiated cells
Organ
31
epithelium
19
blood vessel
19
vasculature
19
vein
11
kidney
1
liver
Project
32
AMP
Genome assembly (visualization)
24
hg19
20
GRCh38
Lab
32
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
audit.WARNING.category!
inconsistent control read length
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
32 results
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ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
FAIRE-seq
Hi-C
primary cell
endothelial cell of umbilical vein
17
1
1
epithelial cell of proximal tubule
7
kidney glomerular epithelial cell
1
1
kidney tubule cell
1
1
Heart fetal (cardiac muscle cell)
1
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