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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
200
total RNA-seq
187
single cell RNA-seq
78
ATAC-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
10
Hi-C
10
RRBS
2
DNase-seq
2
small RNA-seq
1
DNAme array
Assay category
389
Transcription
218
DNA binding
136
DNA accessibility
58
DNA methylation
10
3D chromatin structure
Target of assay
186
histone
186
histone modification
101
broad histone mark
85
narrow histone mark
35
control
Date released
206
May, 2021
May, 2020
134
May, 2022
88
February, 2023
59
September, 2018
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
36
August, 2017
31
July, 2019
21
October, 2019
8
January, 2021
8
June, 2019
7
August, 2020
5
December, 2019
5
November, 2020
4
August, 2021
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2018
Available data
518
bigWig
514
bam
404
fastq
290
bed narrowPeak
225
tsv
153
zippedFastqFolder
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
828
Homo sapiens
Biosample type
2023
tissue
828
primary cell
360
in vitro differentiated cells
304
cell line
8
stem cell
Organ
341
epithelium
320
pancreas
24
connective tissue
20
kidney
16
vasculature
14
blood vessel
12
liver
10
brain
9
vein
8
blood
8
bodily fluid
7
heart
5
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
344
AMP
324
HPAP
159
T1D
1
ITG
Genome assembly (visualization)
432
hg19
382
GRCh38
Lab
324
Klaus Kaestner, Upenn
309
AMP-T2D consortium
194
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
23
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
inconsistent control read length
audit.WARNING.category!
inconsistent control read length
files.file_type!
bigBed narrowPeak
month_released!
May, 2020
BIOSAMPLE
ASSAY
828 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
primary cell
monocyte
85
52
13
1
1
pancreatic alpha cell
11
52
12
29
31
1
Langerhans cell
85
48
pancreatic beta cell
11
21
12
16
16
1
exocrine cell
39
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