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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
269
ChIP-seq
246
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
RRBS
4
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
435
Transcription
288
DNA accessibility
269
DNA binding
58
DNA methylation
4
3D chromatin structure
Target of assay
229
histone
229
histone modification
120
broad histone mark
109
narrow histone mark
34
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
55
June, 2019
54
August, 2017
48
February, 2021
48
July, 2018
43
April, 2018
33
October, 2019
30
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
2
October, 2018
1
November, 2018
Available data
603
bigWig
598
bam
404
fastq
286
bed narrowPeak
269
tsv
153
zippedFastqFolder
104
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
1071
Homo sapiens
Biosample type
2644
tissue
1071
primary cell
634
cell line
373
in vitro differentiated cells
8
stem cell
Organ
392
epithelium
339
pancreas
39
connective tissue
35
vasculature
31
kidney
29
blood vessel
21
brain
20
vein
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
pericardium
Project
546
AMP
321
HPAP
204
T1D
Genome assembly (visualization)
613
hg19
525
GRCh38
Lab
511
AMP-T2D consortium
321
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
Audit category:
51
inconsistent ontology term
27
audit script error
Audit category:
44
missing controlled_by
Audit category:
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
files.file_type!
hic
month_released!
May, 2019
organ_slims!
pericardium
BIOSAMPLE
ASSAY
1071 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
11
52
35
12
31
Langerhans cell
85
48
pancreatic beta cell
11
21
23
12
16
CD8-positive, alpha-beta T cell
33
4
2
1
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