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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ChIP-seq
3
ATAC-seq
2
DNase-seq
1
RRBS
Assay category
36
DNA binding
5
DNA accessibility
1
DNA methylation
Target of assay
22
histone
22
histone modification
12
control
12
narrow histone mark
10
broad histone mark
2
RNA binding protein
2
transcription factor
1
chromatin remodeller
Date released
147
May, 2020
134
May, 2022
122
May, 2021
88
February, 2023
73
September, 2018
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
42
August, 2017
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
53
bam
53
fastq
41
bigWig
28
bed narrowPeak
18
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
Organism
42
Homo sapiens
Biosample type
220
tissue
48
in vitro differentiated cells
42
primary cell
Organ
37
pancreas
25
epithelium
Project
42
AMP
Genome assembly (visualization)
30
hg19
26
GRCh38
Lab
42
AMP-T2D consortium
Audit category:
12
missing controlled_by
Audit category:
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
42 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
RRBS
primary cell
pancreatic alpha cell
11
1
pancreatic beta cell
11
1
pancreatic endocrine cell
12
skeletal muscle myoblast
2
2
1
pancreatic acinar cell
1
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