Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
174
ChIP-seq
48
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
436
Transcription
280
DNA accessibility
174
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
134
histone
134
histone modification
71
broad histone mark
63
narrow histone mark
33
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
147
May, 2020
134
May, 2022
122
May, 2021
88
February, 2023
73
September, 2018
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
42
August, 2017
34
October, 2019
31
July, 2019
9
November, 2017
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
608
bigWig
604
bam
404
fastq
290
bed narrowPeak
270
tsv
153
zippedFastqFolder
108
bigBed narrowPeak
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
975
Homo sapiens
Biosample type
2533
tissue
975
primary cell
566
cell line
337
in vitro differentiated cells
8
stem cell
Organ
398
epithelium
342
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
musculature of body
13
heart
10
liver
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
538
AMP
324
HPAP
112
T1D
1
ITG
Genome assembly (visualization)
524
hg19
433
GRCh38
Lab
503
AMP-T2D consortium
324
Klaus Kaestner, Upenn
147
Kyle Gaulton, UCSD
1
ITG
Audit category:
54
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
files.file_type!
tagAlign
organ_slims!
blood
BIOSAMPLE
ASSAY
975 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
pancreatic alpha cell
52
35
12
11
31
1
Langerhans cell
85
48
pancreatic beta cell
21
23
12
11
16
1
monocyte
54
15
1
1
1
CD8-positive, alpha-beta T cell
4
2
33
1
+ See 93 more…
See all biosamples
Download