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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
ChIP-seq
22
ATAC-seq
Assay category
42
DNA binding
22
DNA accessibility
Target of assay
42
histone
42
histone modification
23
broad histone mark
19
narrow histone mark
Date released
46
September, 2018
13
August, 2017
5
September, 2017
Available data
254
fastq
190
bam
188
bigWig
108
tsv
80
zippedFastqFolder
64
bed narrowPeak
22
bigBed narrowPeak
3
bedpe bed3+
3
cool
3
hic
Organism
64
Homo sapiens
Biosample type
118
tissue
64
primary cell
21
cell line
2
in vitro differentiated cells
Organ
102
epithelium
64
pancreas
22
kidney
21
vasculature
17
blood vessel
17
connective tissue
13
vein
11
brain
9
musculature of body
6
heart
6
liver
3
eye
Project
64
AMP
Genome assembly (visualization)
64
GRCh38
64
hg19
Lab
64
AMP-T2D consortium
Audit category:
32
missing controlled_by
Audit category:
inconsistent control read length
audit.WARNING.category!
inconsistent control read length
month_released!
May, 2020
BIOSAMPLE
ASSAY
64 results
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ChIP-seq
ATAC-seq
primary cell
pancreatic ductal cell
13
4
pancreatic acinar cell
8
5
pancreatic beta cell
5
7
pancreatic alpha cell
5
6
pancreatic endocrine cell
11
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