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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
274
ChIP-seq
247
total RNA-seq
161
ATAC-seq
154
single cell RNA-seq
35
snATAC-seq
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
6
WGBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
403
Transcription
274
DNA binding
228
DNA accessibility
17
DNA methylation
10
3D chromatin structure
Target of assay
232
histone
232
histone modification
122
broad histone mark
110
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
55
June, 2019
54
August, 2017
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
608
bigWig
604
bam
404
fastq
290
bed narrowPeak
270
tsv
108
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
19
zippedFastqFolder
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
949
Homo sapiens
Biosample type
2657
tissue
949
primary cell
636
cell line
377
in vitro differentiated cells
8
stem cell
Organ
322
epithelium
262
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
554
AMP
204
T1D
190
HPAP
1
ITG
Genome assembly (visualization)
623
hg19
531
GRCh38
Lab
519
AMP-T2D consortium
239
Kyle Gaulton, UCSD
190
Klaus Kaestner, Upenn
1
ITG
Audit category:
54
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
lab.title!
Stephen Parker, UMich
month_released!
May, 2022
September, 2023
BIOSAMPLE
ASSAY
949 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
Hi-C
RRBS
WGBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
11
52
13
12
1
6
Langerhans cell
52
27
pancreatic beta cell
11
21
10
12
1
CD8-positive, alpha-beta T cell
33
4
2
1
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