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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
262
ChIP-seq
232
total RNA-seq
159
ATAC-seq
150
single cell RNA-seq
35
snATAC-seq
25
DNase-seq
15
pCHi-C
9
Hi-C
9
RRBS
6
WGBS
1
DNAme array
1
FAIRE-seq
1
small RNA-seq
Assay category
383
Transcription
262
DNA binding
220
DNA accessibility
16
DNA methylation
9
3D chromatin structure
Target of assay
224
histone
224
histone modification
118
broad histone mark
106
narrow histone mark
32
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
205
May, 2021
147
May, 2020
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
54
August, 2017
46
July, 2018
45
February, 2021
41
April, 2018
38
June, 2019
34
October, 2019
23
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
571
bigWig
563
bam
401
fastq
273
bed narrowPeak
250
tsv
100
tagAlign
93
bigBed narrowPeak
43
bed broadPeak
43
bigBed broadPeak
29
bed bed3+
19
zippedFastqFolder
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
1
tar
Organism
905
Homo sapiens
Biosample type
2155
tissue
905
primary cell
636
cell line
284
in vitro differentiated cells
7
stem cell
Organ
317
epithelium
262
pancreas
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
musculature of body
13
heart
9
liver
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
511
AMP
203
T1D
190
HPAP
1
ITG
Genome assembly (visualization)
584
hg19
494
GRCh38
Lab
476
AMP-T2D consortium
238
Kyle Gaulton, UCSD
190
Klaus Kaestner, Upenn
1
ITG
Audit category:
41
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
month_released!
December, 2019
May, 2022
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
905 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
Hi-C
RRBS
WGBS
DNAme array
FAIRE-seq
small RNA-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
11
52
13
12
1
6
Langerhans cell
52
27
pancreatic beta cell
11
21
10
12
1
CD8-positive, alpha-beta T cell
33
4
2
1
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