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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
192
total RNA-seq
187
ATAC-seq
187
single cell RNA-seq
153
ChIP-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
10
RRBS
9
Hi-C
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
381
Transcription
275
DNA accessibility
153
DNA binding
57
DNA methylation
9
3D chromatin structure
Target of assay
114
histone
114
histone modification
58
narrow histone mark
56
broad histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
55
June, 2019
54
August, 2017
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
March, 2020
1
March, 2023
1
November, 2018
Available data
455
bam
437
bigWig
404
fastq
218
tsv
163
bed narrowPeak
153
zippedFastqFolder
108
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
5
hic
4
hdf5
3
bedpe bed3+
3
cool
2
csv
1
bed bed3
1
tar
Organism
876
Homo sapiens
Biosample type
2691
tissue
876
primary cell
604
cell line
237
in vitro differentiated cells
4
stem cell
Organ
401
epithelium
342
pancreas
38
connective tissue
36
kidney
36
vasculature
30
blood vessel
21
brain
21
vein
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
498
AMP
324
HPAP
53
T1D
1
ITG
Genome assembly (visualization)
438
hg19
382
GRCh38
Lab
498
AMP-T2D consortium
324
Klaus Kaestner, Upenn
53
Kyle Gaulton, UCSD
1
ITG
Audit category:
53
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
month_released!
March, 2020
May, 2021
organ_slims!
esophagus
BIOSAMPLE
ASSAY
876 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
RRBS
Hi-C
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
pancreatic alpha cell
52
35
12
11
31
1
Langerhans cell
85
48
pancreatic beta cell
21
23
12
11
16
1
exocrine cell
39
pancreatic acinar cell
4
9
12
8
1
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