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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1019
total RNA-seq
901
ChIP-seq
231
ATAC-seq
180
single cell RNA-seq
87
RNA microarray
27
WGBS
24
pCHi-C
18
snATAC-seq
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
DNase-seq
Assay category
1215
Transcription
901
DNA binding
255
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
622
histone modification
621
histone
321
narrow histone mark
300
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
279
August, 2017
238
October, 2019
229
August, 2021
193
May, 2020
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
77
February, 2023
77
July, 2019
73
October, 2018
48
December, 2017
47
September, 2023
42
May, 2022
40
March, 2020
40
May, 2024
40
November, 2019
38
May, 2021
25
February, 2020
23
October, 2017
19
April, 2020
17
November, 2018
15
May, 2023
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1877
bam
1766
bigWig
1076
tsv
960
bed narrowPeak
555
bigBed narrowPeak
347
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
bigBed broadPeak
151
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2534
Homo sapiens
Biosample type
2543
tissue
795
primary cell
585
cell line
329
in vitro differentiated cells
8
stem cell
Organ
545
connective tissue
486
adipose tissue
443
pancreas
357
liver
286
heart
238
brain
231
kidney
158
bone element
128
blood vessel
128
vasculature
86
limb
69
artery
53
eye
50
musculature of body
41
nerve
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
2473
AMP
47
KPMP
19
LungMap
4
T1D
Genome assembly (visualization)
1677
GRCh38
1571
hg19
Lab
2243
AMP-T2D consortium
142
Katalin Susztak, Upenn
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
inconsistent control read length
1
inconsistent assembly
audit.WARNING.category!
inconsistent control read length
files.file_type!
bigBed broadPeak
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
2543 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
281
71
39
6
4
1
3
1
1
4
1
adipose tissue
382
2
3
3
1
liver
167
144
20
1
3
1
1
1
1
kidney
49
27
75
64
6
1
1
1
bone element
84
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