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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
64
single cell RNA-seq
49
total RNA-seq
7
ChIP-seq
6
snATAC-seq
3
snDrop-seq
2
RNA microarray
1
Hi-C
1
RRBS
Assay category
113
Transcription
81
DNA accessibility
7
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
6
control
1
RNA binding protein
1
transcription factor
Date released
128
August, 2021
47
September, 2023
14
May, 2023
8
February, 2021
5
April, 2019
3
December, 2019
2
October, 2019
1
July, 2019
Available data
153
bed narrowPeak
98
bam
bigWig
87
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
64
xls
62
txt
12
tsv
5
csv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
208
Homo sapiens
Biosample type
208
tissue
8
primary cell
7
cell line
Organ
208
kidney
156
heart
132
pancreas
100
bone element
96
liver
66
connective tissue
65
adipose tissue
63
blood vessel
63
brain
63
vasculature
53
eye
46
artery
31
limb
25
musculature of body
20
lung
16
skeleton
15
epithelium
12
nerve
9
spleen
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
161
AMP
47
KPMP
Genome assembly (visualization)
75
GRCh38
2
hg19
Lab
142
Katalin Susztak, Upenn
47
KPMP
19
AMP-T2D consortium
Audit category:
7
audit script error
audit.WARNING.category!
inconsistent control read length
files.file_type!
bigWig
BIOSAMPLE
ASSAY
208 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
snDrop-seq
RNA microarray
Hi-C
RRBS
tissue
kidney
75
64
49
7
6
1
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
kidney interstitium
1
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