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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
209
ChIP-seq
27
DNase-seq
19
total RNA-seq
16
ATAC-seq
4
small RNA-seq
2
pCHi-C
1
FAIRE-seq
1
RNA microarray
1
RRBS
Assay category
209
DNA binding
44
DNA accessibility
23
Transcription
1
DNA methylation
Target of assay
184
histone
184
histone modification
114
narrow histone mark
70
broad histone mark
25
control
Date released
86
October, 2019
82
November, 2017
28
May, 2019
25
June, 2019
16
October, 2017
15
February, 2023
12
February, 2020
11
July, 2019
2
March, 2020
2
November, 2018
1
December, 2019
Available data
226
bam
204
bed narrowPeak
202
bigWig
118
tagAlign
116
bigBed narrowPeak
36
bed broadPeak
27
bed bed3+
27
bigBed broadPeak
26
tsv
12
fastq
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
280
Homo sapiens
Biosample type
409
primary cell
280
tissue
79
cell line
23
in vitro differentiated cells
Organ
547
connective tissue
500
pancreas
488
adipose tissue
360
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
280
AMP
Genome assembly (visualization)
203
GRCh38
155
hg19
Lab
280
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
1
audit script error
Audit category:
4
missing controlled_by
audit.WARNING.category!
inconsistent control read length
files.file_type!
hdf5
BIOSAMPLE
ASSAY
280 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
pCHi-C
FAIRE-seq
RNA microarray
RRBS
tissue
brain
20
14
1
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
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