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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
748
total RNA-seq
567
ChIP-seq
198
ATAC-seq
174
single cell RNA-seq
171
DNase-seq
87
RNA microarray
24
pCHi-C
23
WGBS
17
snATAC-seq
14
small RNA-seq
12
Hi-C
9
RRBS
3
snDrop-seq
2
FAIRE-seq
Assay category
936
Transcription
567
DNA binding
388
DNA accessibility
32
DNA methylation
12
3D chromatin structure
Target of assay
382
histone modification
381
histone
194
broad histone mark
187
narrow histone mark
108
control
77
transcription factor
20
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
545
February, 2021
227
August, 2021
190
October, 2019
159
June, 2019
143
May, 2020
113
May, 2019
93
August, 2017
80
April, 2019
77
February, 2023
71
July, 2019
48
December, 2017
47
September, 2023
42
May, 2022
40
May, 2024
31
March, 2020
24
February, 2020
23
October, 2018
19
April, 2020
19
November, 2018
16
November, 2017
15
May, 2023
7
December, 2018
7
January, 2019
4
October, 2017
3
December, 2019
3
May, 2021
2
January, 2018
1
November, 2019
Available data
1477
bam
1398
bigWig
860
bed narrowPeak
801
tsv
498
bigBed narrowPeak
tagAlign
193
bed broadPeak
178
bed bed3+
170
bigBed broadPeak
163
fastq
151
txt
64
xls
19
bed bedMethyl
19
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
2047
Homo sapiens
Biosample type
2049
tissue
641
primary cell
535
cell line
337
in vitro differentiated cells
8
stem cell
Organ
539
connective tissue
pancreas
480
adipose tissue
313
heart
299
kidney
290
liver
158
bone element
147
brain
133
blood vessel
133
vasculature
122
limb
73
artery
67
musculature of body
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1982
AMP
47
KPMP
19
LungMap
1
T1D
Genome assembly (visualization)
1362
GRCh38
1248
hg19
Lab
1760
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
1
Kyle Gaulton, UCSD
Audit category:
91
inconsistent ontology term
27
inconsistent control
8
audit script error
Audit category:
12
missing controlled_by
Audit category:
inconsistent control read length
audit.WARNING.category!
inconsistent control read length
files.file_type!
tagAlign
organ_slims!
pancreas
BIOSAMPLE
ASSAY
2049 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
WGBS
snATAC-seq
small RNA-seq
Hi-C
RRBS
snDrop-seq
FAIRE-seq
tissue
adipose tissue
382
2
3
1
3
liver
167
74
20
1
2
1
3
1
1
1
kidney
49
27
75
64
13
6
1
1
1
bone element
84
heart left ventricle
3
35
2
18
3
1
4
1
1
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