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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
835
ChIP-seq
251
ATAC-seq
142
DNase-seq
106
total RNA-seq
85
RNA microarray
71
single cell RNA-seq
28
snATAC-seq
26
WGBS
12
Hi-C
11
RRBS
5
pCHi-C
4
FAIRE-seq
4
MeRIP-seq
Assay category
835
DNA binding
425
DNA accessibility
177
Transcription
37
DNA methylation
12
3D chromatin structure
Target of assay
573
histone modification
572
histone
306
narrow histone mark
266
broad histone mark
170
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
190
August, 2017
169
October, 2019
131
June, 2019
130
August, 2021
108
May, 2019
91
February, 2023
87
February, 2021
82
November, 2017
80
April, 2019
73
October, 2018
66
May, 2022
50
May, 2020
48
December, 2017
47
September, 2023
40
May, 2024
26
November, 2018
25
July, 2019
23
October, 2017
21
November, 2019
19
April, 2020
15
May, 2023
12
March, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
July, 2018
4
November, 2020
2
January, 2018
2
May, 2021
1
August, 2022
1
December, 2019
Available data
1787
bam
1675
bigWig
tsv
886
bed narrowPeak
471
bigBed narrowPeak
371
fastq
238
tagAlign
177
bed broadPeak
169
bed bed3+
157
txt
140
bigBed broadPeak
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1571
Homo sapiens
Biosample type
1580
tissue
813
primary cell
517
cell line
246
in vitro differentiated cells
4
stem cell
Organ
287
kidney
242
brain
225
pancreas
206
liver
202
heart
119
blood vessel
119
vasculature
limb
100
bone element
90
connective tissue
89
adipose tissue
75
musculature of body
69
artery
51
eye
38
nerve
24
spleen
19
lung
18
ureter
16
skeleton
12
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
1483
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
844
GRCh38
739
hg19
Lab
1229
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
87
inconsistent ontology term
27
inconsistent control
2
audit script error
Audit category:
26
missing controlled_by
Audit category:
inconsistent control read length
1
inconsistent assembly
audit.WARNING.category!
inconsistent control read length
files.file_type!
tsv
organ_slims!
limb
BIOSAMPLE
ASSAY
1580 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
RNA microarray
single cell RNA-seq
snATAC-seq
WGBS
Hi-C
RRBS
pCHi-C
FAIRE-seq
MeRIP-seq
tissue
kidney
27
75
13
49
59
6
1
1
1
liver
144
20
2
20
1
3
1
1
islet of Langerhans
70
67
1
31
7
3
1
4
1
4
bone element
84
heart left ventricle
35
2
3
4
1
1
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