Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
240
ChIP-seq
177
DNase-seq
97
total RNA-seq
29
ATAC-seq
18
WGBS
9
RRBS
6
single cell RNA-seq
2
FAIRE-seq
Assay category
240
DNA binding
208
DNA accessibility
103
Transcription
27
DNA methylation
Target of assay
94
histone modification
93
histone
79
transcription factor
67
control
56
broad histone mark
37
narrow histone mark
15
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
190
August, 2017
163
June, 2019
57
October, 2018
48
December, 2017
26
November, 2018
24
May, 2022
17
October, 2017
14
July, 2019
7
December, 2018
7
January, 2019
6
April, 2018
6
November, 2017
6
September, 2017
4
October, 2019
2
July, 2018
1
March, 2019
Available data
1901
bam
1766
bigWig
1076
tsv
978
bed narrowPeak
555
bigBed narrowPeak
371
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
571
Homo sapiens
Biosample type
578
tissue
442
primary cell
402
cell line
124
in vitro differentiated cells
2
stem cell
Organ
220
pancreas
82
liver
69
kidney
48
musculature of body
45
adipose tissue
45
connective tissue
44
brain
37
limb
34
heart
24
spleen
18
ureter
6
blood vessel
6
vasculature
4
artery
3
eye
2
nerve
1
pericardium
Project
578
AMP
Genome assembly (visualization)
471
hg19
454
GRCh38
Lab
552
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
26
missing controlled_by
Audit category:
inconsistent control read length
1
inconsistent assembly
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
578 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
WGBS
RRBS
single cell RNA-seq
FAIRE-seq
tissue
islet of Langerhans
34
1
97
20
1
6
1
liver
66
2
1
1
body of pancreas
32
4
4
2
brain
9
14
1
spleen
20
1
1
2
+ See 51 more…
See all biosamples
Download