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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
589
ChIP-seq
208
ATAC-seq
177
DNase-seq
4
FAIRE-seq
Assay category
589
DNA binding
389
DNA accessibility
Target of assay
514
histone modification
513
histone
263
narrow histone mark
250
broad histone mark
75
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
163
June, 2019
151
October, 2019
93
May, 2019
65
April, 2019
64
August, 2021
63
February, 2023
61
August, 2017
58
November, 2017
44
October, 2018
40
May, 2024
38
May, 2022
36
December, 2017
27
May, 2020
20
November, 2019
17
November, 2018
12
October, 2017
8
February, 2021
7
July, 2019
6
January, 2019
3
December, 2018
2
March, 2020
Available data
1901
bam
1765
bigWig
1076
tsv
978
bed narrowPeak
555
bigBed narrowPeak
370
fastq
238
tagAlign
212
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
972
Homo sapiens
Biosample type
978
tissue
380
cell line
290
primary cell
115
in vitro differentiated cells
Organ
192
brain
173
heart
153
kidney
118
pancreas
112
liver
100
blood vessel
100
vasculature
92
limb
62
artery
51
musculature of body
30
eye
27
nerve
18
ureter
14
spleen
13
adipose tissue
13
connective tissue
12
epithelium
8
bone element
8
skeleton
1
pituitary gland
Project
976
AMP
2
T1D
Genome assembly (visualization)
877
GRCh38
771
hg19
Lab
836
AMP-T2D consortium
64
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
inconsistent control read length
1
inconsistent assembly
audit.WARNING.category!
inconsistent control read length
lab.title!
Stephen Parker, UMich
BIOSAMPLE
ASSAY
978 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
liver
81
20
2
kidney
20
64
13
1
islet of Langerhans
20
37
1
1
coronary artery
3
36
2
left cardiac atrium
40
1
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