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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
207
ChIP-seq
97
total RNA-seq
29
ATAC-seq
10
DNase-seq
10
WGBS
6
single cell RNA-seq
3
RRBS
2
FAIRE-seq
Assay category
207
DNA binding
103
Transcription
41
DNA accessibility
13
DNA methylation
Target of assay
79
transcription factor
66
control
62
histone modification
61
histone
38
broad histone mark
23
narrow histone mark
15
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
163
August, 2017
57
October, 2018
48
December, 2017
26
November, 2018
24
May, 2022
17
October, 2017
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
2
July, 2018
1
March, 2019
Available data
1894
bam
1760
bigWig
1076
tsv
972
bed narrowPeak
549
bigBed narrowPeak
364
fastq
231
tagAlign
207
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
364
Homo sapiens
Biosample type
404
primary cell
401
cell line
364
tissue
124
in vitro differentiated cells
2
stem cell
Organ
201
pancreas
82
liver
43
adipose tissue
43
connective tissue
24
spleen
12
brain
2
musculature of body
Project
364
AMP
Genome assembly (visualization)
282
hg19
268
GRCh38
Lab
338
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
Audit category:
26
missing controlled_by
Audit category:
inconsistent control read length
audit.WARNING.category!
inconsistent control read length
organ_slims!
mammary gland
BIOSAMPLE
ASSAY
364 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
single cell RNA-seq
RRBS
FAIRE-seq
tissue
islet of Langerhans
28
97
20
1
6
1
liver
66
2
1
1
body of pancreas
32
4
2
2
spleen
20
1
1
2
omental fat pad
11
1
1
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