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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
738
total RNA-seq
186
ChIP-seq
68
ATAC-seq
11
snATAC-seq
10
WGBS
9
DNase-seq
4
Hi-C
4
MeRIP-seq
4
small RNA-seq
2
FAIRE-seq
2
RRBS
2
pCHi-C
1
RNA microarray
Assay category
742
Transcription
186
DNA binding
90
DNA accessibility
12
DNA methylation
4
3D chromatin structure
Target of assay
101
histone
101
histone modification
58
broad histone mark
53
control
43
narrow histone mark
34
transcription factor
13
RNA binding protein
2
nucleotide modification
Date released
444
February, 2021
200
August, 2017
120
July, 2018
73
October, 2018
40
November, 2019
37
May, 2021
24
May, 2022
19
February, 2023
16
July, 2019
10
March, 2020
8
January, 2021
8
November, 2018
April, 2018
6
October, 2017
6
September, 2017
5
June, 2019
5
March, 2019
5
October, 2019
4
November, 2020
3
August, 2021
3
February, 2020
2
May, 2019
1
August, 2022
1
January, 2018
1
May, 2023
Available data
916
bam
843
bigWig
726
tsv
245
fastq
131
bed narrowPeak
67
bigBed narrowPeak
33
bed bed3+
24
tagAlign
23
bed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
8
bigBed broadPeak
6
txt
3
bedpe bed3+
3
hic
1
bedpe
Organism
1033
Homo sapiens
Biosample type
1041
tissue
344
primary cell
94
in vitro differentiated cells
92
cell line
1
stem cell
Organ
547
connective tissue
494
pancreas
488
adipose tissue
360
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1011
AMP
30
T1D
Genome assembly (visualization)
884
hg19
855
GRCh38
Lab
978
AMP-T2D consortium
51
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
audit script error
1
inconsistent ontology term
Audit category:
22
missing controlled_by
Audit category:
inconsistent control read length
1
inconsistent assembly
audit.WARNING.category!
inconsistent control read length
month_released!
April, 2018
BIOSAMPLE
ASSAY
1041 results
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total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
Hi-C
MeRIP-seq
small RNA-seq
FAIRE-seq
RRBS
pCHi-C
RNA microarray
tissue
islet of Langerhans
278
51
58
7
1
3
4
1
1
adipose tissue
382
2
3
3
1
bone tissue
58
body of pancreas
3
34
4
2
4
2
subcutaneous abdominal adipose tissue
36
3
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