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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
789
ChIP-seq
748
total RNA-seq
198
ATAC-seq
174
single cell RNA-seq
87
RNA microarray
24
pCHi-C
23
WGBS
17
snATAC-seq
14
small RNA-seq
12
DNase-seq
12
Hi-C
9
RRBS
3
snDrop-seq
2
FAIRE-seq
Assay category
936
Transcription
789
DNA binding
229
DNA accessibility
32
DNA methylation
12
3D chromatin structure
Target of assay
554
histone modification
553
histone
291
narrow histone mark
262
broad histone mark
158
control
77
transcription factor
20
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
545
February, 2021
239
October, 2019
227
August, 2021
193
May, 2020
June, 2019
136
August, 2017
113
May, 2019
82
November, 2017
80
April, 2019
77
February, 2023
71
July, 2019
48
December, 2017
47
September, 2023
42
May, 2022
40
May, 2024
31
March, 2020
24
February, 2020
23
October, 2018
19
April, 2020
19
November, 2018
18
October, 2017
15
May, 2023
7
December, 2018
7
January, 2019
3
December, 2019
3
May, 2021
2
January, 2018
1
November, 2019
Available data
1318
bam
1239
bigWig
801
tsv
701
bed narrowPeak
339
bigBed narrowPeak
222
tagAlign
163
fastq
151
txt
64
xls
34
bed broadPeak
19
bed bed3+
19
bed bedMethyl
19
bigBed bedMethyl
11
bigBed broadPeak
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
2110
Homo sapiens
Biosample type
2112
tissue
686
primary cell
544
cell line
374
in vitro differentiated cells
8
stem cell
Organ
546
connective tissue
pancreas
487
adipose tissue
360
liver
286
heart
240
brain
231
kidney
158
bone element
130
blood vessel
130
vasculature
90
limb
71
artery
53
eye
50
musculature of body
43
nerve
25
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2045
AMP
47
KPMP
19
LungMap
1
T1D
Genome assembly (visualization)
1313
GRCh38
1196
hg19
Lab
1823
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
1
Kyle Gaulton, UCSD
Audit category:
90
inconsistent ontology term
27
inconsistent control
8
audit script error
Audit category:
16
missing controlled_by
Audit category:
inconsistent control read length
audit.WARNING.category!
inconsistent control read length
month_released!
June, 2019
organ_slims!
pancreas
BIOSAMPLE
ASSAY
2112 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
RNA microarray
pCHi-C
WGBS
snATAC-seq
small RNA-seq
DNase-seq
Hi-C
RRBS
snDrop-seq
FAIRE-seq
tissue
adipose tissue
2
382
3
1
3
liver
144
167
20
1
1
3
1
2
1
1
kidney
27
49
75
64
6
1
1
1
bone element
84
heart left ventricle
35
3
2
18
1
4
1
1
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