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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
280
total RNA-seq
110
ChIP-seq
60
ATAC-seq
25
DNase-seq
11
snATAC-seq
6
single cell RNA-seq
4
MeRIP-seq
4
WGBS
3
Hi-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
Assay category
288
Transcription
110
DNA binding
98
DNA accessibility
6
DNA methylation
3
3D chromatin structure
Target of assay
66
histone
66
histone modification
38
broad histone mark
29
control
28
narrow histone mark
17
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
143
August, 2017
120
July, 2018
50
October, 2018
39
November, 2019
37
May, 2021
24
May, 2022
22
June, 2019
18
February, 2023
March, 2020
8
January, 2021
7
November, 2018
6
April, 2018
6
July, 2019
6
September, 2017
5
March, 2019
5
October, 2017
4
November, 2020
3
October, 2019
2
August, 2021
2
May, 2019
1
August, 2022
1
February, 2020
Available data
439
bam
381
bigWig
272
tsv
208
fastq
134
bed narrowPeak
75
bigBed narrowPeak
45
bed bed3+
38
bed broadPeak
24
bigBed broadPeak
16
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
2
bedpe bed3+
2
hic
1
bedpe
Organism
502
Homo sapiens
Biosample type
509
tissue
342
primary cell
87
cell line
3
in vitro differentiated cells
Organ
546
connective tissue
491
pancreas
487
adipose tissue
357
liver
306
heart
299
kidney
263
brain
158
bone element
130
blood vessel
130
vasculature
122
limb
77
musculature of body
73
artery
56
eye
43
nerve
24
spleen
19
lung
18
ureter
16
skeleton
15
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
spinal cord
1
thymus
Project
483
AMP
26
T1D
Genome assembly (visualization)
420
hg19
396
GRCh38
Lab
446
AMP-T2D consortium
51
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
audit script error
Audit category:
10
missing controlled_by
Audit category:
inconsistent control read length
1
inconsistent assembly
audit.WARNING.category!
inconsistent control read length
month_released!
March, 2020
BIOSAMPLE
ASSAY
509 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
snATAC-seq
single cell RNA-seq
MeRIP-seq
WGBS
Hi-C
FAIRE-seq
RRBS
small RNA-seq
tissue
islet of Langerhans
276
48
56
1
7
6
4
3
1
1
body of pancreas
3
34
4
4
2
2
pancreas
1
12
2
4
2
1
1
endocrine pancreas
16
renal pelvis
10
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