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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
174
total RNA-seq
50
ChIP-seq
16
small RNA-seq
12
WGBS
8
snATAC-seq
6
ATAC-seq
6
RRBS
4
Hi-C
2
FAIRE-seq
Assay category
190
Transcription
50
DNA binding
18
DNA methylation
16
DNA accessibility
4
3D chromatin structure
Target of assay
27
histone
27
histone modification
27
narrow histone mark
23
control
Date released
545
February, 2021
279
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
73
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
257
bam
233
bigWig
190
tsv
50
tagAlign
34
bed narrowPeak
14
bed bedMethyl
14
bigBed bedMethyl
2
bigBed narrowPeak
Organism
278
Homo sapiens
Biosample type
278
tissue
186
primary cell
1
cell line
Organ
201
liver
20
heart
14
pancreas
11
brain
10
adipose tissue
10
connective tissue
7
blood vessel
7
musculature of body
7
vasculature
5
limb
4
kidney
1
artery
1
pericardium
Project
270
AMP
8
T1D
Genome assembly (visualization)
230
hg19
223
GRCh38
Lab
270
AMP-T2D consortium
8
Kyle Gaulton, UCSD
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
278 results
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Clear Filters
total RNA-seq
ChIP-seq
small RNA-seq
WGBS
snATAC-seq
ATAC-seq
RRBS
Hi-C
FAIRE-seq
tissue
liver
145
50
1
heart left ventricle
2
4
2
1
islet of Langerhans
4
1
omental fat pad
4
1
pancreas
4
1
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