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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
Hi-C
3
total RNA-seq
Assay category
6
3D chromatin structure
3
Transcription
Target of assay
1
histone
1
histone modification
narrow histone mark
Date released
4
July, 2019
3
February, 2020
1
March, 2020
1
October, 2019
Available data
bam
87
bigWig
86
bed narrowPeak
78
bigBed narrowPeak
40
bed broadPeak
40
bigBed broadPeak
38
bed bed3+
7
tsv
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
9
Homo sapiens
Biosample type
7
tissue
2
primary cell
Organ
251
pancreas
210
kidney
207
epithelium
166
heart
100
liver
93
bone element
75
connective tissue
52
eye
51
vasculature
50
blood vessel
39
artery
38
adipose tissue
32
musculature of body
31
brain
20
lung
9
blood
9
bodily fluid
8
skeleton
7
limb
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
9
AMP
Genome assembly (visualization)
2
hg19
Lab
9
AMP-T2D consortium
Audit category:
1
audit script error
audit.WARNING.category!
inconsistent control read length
files.file_type!
bam
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
9 results
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Clear Filters
Hi-C
total RNA-seq
tissue
gastrocnemius medialis
4
1
tibial artery
1
tibial nerve
1
primary cell
endothelial cell of umbilical vein
2
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