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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
total RNA-seq
5
STARR-seq
4
ChIP-seq
3
Hi-C
1
ATAC-seq
1
whole genome sequencing assay
Assay category
10
Transcription
4
DNA binding
3
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
4
control
Date released
22
August, 2021
2
March, 2019
Available data
bed narrowPeak
bigWig
10
tsv
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
24
Homo sapiens
Biosample type
20
cell line
4
tissue
Organ
17
liver
4
pancreas
2
kidney
Project
24
AMP
Genome assembly (visualization)
3
hg19
1
GRCh38
Lab
913
AMP-T2D consortium
314
Klaus Kaestner, Upenn
105
Kyle Gaulton, UCSD
78
Katalin Susztak, Upenn
47
KPMP
24
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
1
Maike Sander, UCSD
Audit category:
1
inconsistent ontology term
audit.WARNING.category!
inconsistent control read length
files.file_type!
bed narrowPeak
bigWig
month_released!
December, 2018
BIOSAMPLE
ASSAY
24 results
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total RNA-seq
STARR-seq
ChIP-seq
Hi-C
ATAC-seq
whole genome sequencing assay
cell line
HepG2
9
2
4
1
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
1
2
1
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