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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
ChIP-seq
40
single cell RNA-seq
16
total RNA-seq
3
ATAC-seq
Assay category
92
DNA binding
56
Transcription
3
DNA accessibility
Target of assay
71
control
13
histone
13
histone modification
9
narrow histone mark
8
transcription factor
4
broad histone mark
2
RNA binding protein
Date released
715
February, 2021
399
May, 2021
359
August, 2017
341
May, 2020
319
August, 2021
244
October, 2019
205
February, 2023
200
May, 2022
168
July, 2018
106
July, 2019
92
November, 2017
64
March, 2020
61
November, 2019
59
September, 2018
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
37
February, 2018
33
December, 2017
31
October, 2018
25
February, 2020
23
May, 2019
19
April, 2020
17
October, 2017
16
April, 2019
16
January, 2021
15
May, 2023
15
November, 2018
15
November, 2020
10
December, 2019
9
January, 2019
8
January, 2018
8
June, 2019
7
August, 2020
6
September, 2017
5
December, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
June, 2018
1
August, 2022
Available data
371
bam
344
fastq
316
bigWig
294
bed narrowPeak
bigBed narrowPeak
67
tagAlign
57
bed broadPeak
51
bigBed broadPeak
19
zippedFastqFolder
3
tar
Organism
151
Homo sapiens
Biosample type
64
cell line
62
primary cell
25
tissue
Organ
64
liver
28
brain
21
epithelium
19
pancreas
2
vasculature
1
blood vessel
Project
92
AMP
59
HPAP
Genome assembly (visualization)
21
hg19
3
GRCh38
Lab
92
AMP-T2D consortium
59
Klaus Kaestner, Upenn
Audit category:
inconsistent control read length
audit.WARNING.category!
inconsistent control read length
files.file_type!
bigBed narrowPeak
month_released!
June, 2018
BIOSAMPLE
ASSAY
151 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
cell line
HepG2
64
primary cell
Langerhans cell
40
pancreatic alpha cell
15
2
pancreatic beta cell
1
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
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tissue
cingulate gyrus
8
layer of hippocampus
6
substantia nigra
4
caudate nucleus
3
middle frontal area 46
3
+ See 1 more…
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