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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
ChIP-seq
36
DNase-seq
8
ATAC-seq
8
total RNA-seq
4
Hi-C
1
RRBS
1
WGBS
Assay category
59
DNA binding
44
DNA accessibility
8
Transcription
4
3D chromatin structure
2
DNA methylation
Target of assay
43
histone
43
histone modification
30
broad histone mark
16
control
13
narrow histone mark
Date released
69
October, 2019
32
June, 2019
7
July, 2019
May, 2019
6
February, 2021
3
February, 2020
Available data
108
bam
86
bed narrowPeak
86
bigWig
78
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
8
tsv
2
bed bedMethyl
2
bigBed bedMethyl
Organism
117
Homo sapiens
Biosample type
116
tissue
1
primary cell
Organ
935
pancreas
763
liver
678
connective tissue
514
epithelium
491
adipose tissue
372
heart
344
kidney
258
brain
186
vasculature
180
blood vessel
159
bone element
136
artery
115
limb
89
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
34
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
117
AMP
Genome assembly (visualization)
92
GRCh38
92
hg19
Lab
117
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
audit.WARNING.category!
inconsistent control read length
files.file_type!
csv
month_released!
May, 2019
BIOSAMPLE
ASSAY
117 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
RRBS
WGBS
tissue
tibial nerve
35
2
1
5
tibial artery
23
2
1
1
muscle of arm
17
muscle of leg
13
1
gastrocnemius medialis
1
4
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primary cell
pericardium fibroblast
1
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