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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
82
ATAC-seq
41
WGBS
37
ChIP-seq
34
single cell RNA-seq
26
total RNA-seq
22
snATAC-seq
Assay category
291
DNA accessibility
60
Transcription
41
DNA methylation
37
DNA binding
Target of assay
19
histone
19
histone modification
14
control
11
narrow histone mark
8
broad histone mark
4
RNA binding protein
4
transcription factor
Date released
709
February, 2021
399
May, 2021
395
August, 2017
385
November, 2017
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
83
December, 2017
82
November, 2018
80
April, 2019
75
October, 2018
72
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
37
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
253
bam
253
bed narrowPeak
235
bigWig
215
bigBed narrowPeak
190
bed bed3+
187
bed broadPeak
187
bigBed broadPeak
134
zippedFastqFolder
35
fastq
7
txt
Organism
429
Homo sapiens
Biosample type
235
tissue
194
primary cell
Organ
119
pancreas
105
epithelium
81
kidney
45
musculature of body
42
liver
35
heart
32
limb
30
brain
18
connective tissue
18
ureter
7
eye
7
vasculature
5
blood vessel
2
artery
1
adipose tissue
Project
295
AMP
134
HPAP
Genome assembly (visualization)
233
hg19
217
GRCh38
Lab
231
AMP-T2D consortium
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
26
inconsistent ontology term
1
audit script error
audit.WARNING.category!
inconsistent control read length
files.file_type!
csv
BIOSAMPLE
ASSAY
429 results
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Clear Filters
DNase-seq
ATAC-seq
WGBS
ChIP-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
tissue
liver
20
20
islet of Langerhans
18
6
6
heart
18
muscle of arm
17
kidney
13
+ See 37 more…
primary cell
Langerhans cell
33
21
pancreatic alpha cell
24
25
pancreatic beta cell
15
16
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
+ See 21 more…
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