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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
318
ChIP-seq
10
MeRIP-seq
4
total RNA-seq
3
single cell RNA-seq
1
ATAC-seq
1
DNase-seq
Assay category
318
DNA binding
7
Transcription
2
DNA accessibility
Target of assay
234
transcription factor
65
control
65
recombinant protein
32
RNA binding protein
21
histone
21
histone modification
12
narrow histone mark
9
broad histone mark
9
chromatin remodeller
5
nucleotide modification
2
other context
2
other post-translational modification
Date released
707
February, 2021
318
November, 2017
310
August, 2017
309
May, 2021
295
August, 2021
291
May, 2020
265
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
83
December, 2017
83
November, 2018
80
April, 2019
75
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
37
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
9
October, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
380
bam
321
bigWig
306
fastq
296
bed narrowPeak
294
bigBed narrowPeak
tagAlign
58
bed broadPeak
52
bigBed broadPeak
7
tsv
3
tar
1
bed bed3+
Organism
337
Homo sapiens
Biosample type
299
cell line
20
tissue
18
primary cell
Organ
293
liver
25
brain
13
epithelium
11
pancreas
6
connective tissue
6
vasculature
3
blood vessel
Project
337
AMP
Genome assembly (visualization)
262
hg19
227
GRCh38
Lab
327
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
7
inconsistent ontology term
Audit category:
7
missing controlled_by
Audit category:
inconsistent control read length
4
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
337 results
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Clear Filters
ChIP-seq
MeRIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
cell line
HepG2
293
EndoC_BH1
6
tissue
layer of hippocampus
8
middle frontal area 46
6
islet of Langerhans
4
cerebellum (Hemisphere)
2
primary cell
osteoblast
4
1
1
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
pancreatic cell
1
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