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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
90
ChIP-seq
Assay category
90
DNA binding
Target of assay
323
transcription factor
108
control
91
histone modification
90
histone
81
recombinant protein
54
narrow histone mark
52
RNA binding protein
36
broad histone mark
12
chromatin remodeller
2
other context
2
other post-translational modification
Date released
31
August, 2017
27
May, 2020
17
December, 2017
6
August, 2021
5
October, 2019
4
November, 2017
Available data
70
bed narrowPeak
70
bigWig
67
bam
47
tagAlign
32
fastq
25
bigBed narrowPeak
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
Organism
90
Homo sapiens
Biosample type
68
tissue
12
in vitro differentiated cells
7
cell line
3
primary cell
Organ
187
brain
142
pancreas
97
heart
90
liver
88
epithelium
78
connective tissue
71
vasculature
70
blood vessel
49
limb
33
musculature of body
32
adipose tissue
30
kidney
24
nerve
20
artery
15
vein
10
embryo
6
spleen
4
gonad
4
ovary
3
eye
1
blood
1
bodily fluid
1
lymph node
1
pituitary gland
Project
90
AMP
Genome assembly (visualization)
70
hg19
59
GRCh38
Lab
87
AMP-T2D consortium
3
Bing Ren, UCSD
Audit category:
1
missing controlled_by
Audit category:
inconsistent control read length
audit.WARNING.category!
inconsistent control read length
files.file_type!
vcf
organ_slims!
lung
BIOSAMPLE
ASSAY
90 results
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Clear Filters
ChIP-seq
tissue
liver
63
right lobe of liver
5
in vitro differentiated cells
hepatocyte
12
cell line
HepG2
7
primary cell
hepatocyte
3
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