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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
483
ChIP-seq
169
total RNA-seq
5
DNase-seq
3
ATAC-seq
3
small RNA-seq
2
pCHi-C
1
WGBS
Assay category
483
DNA binding
172
Transcription
8
DNA accessibility
1
DNA methylation
Target of assay
311
transcription factor
101
control
81
recombinant protein
68
histone modification
67
histone
51
RNA binding protein
44
narrow histone mark
23
broad histone mark
12
chromatin remodeller
2
other context
2
other post-translational modification
Date released
293
November, 2017
194
May, 2020
63
December, 2017
48
November, 2018
25
August, 2017
13
August, 2021
7
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
2
June, 2019
2
March, 2020
1
February, 2020
1
February, 2021
Available data
654
bam
595
bigWig
438
fastq
416
bed narrowPeak
333
bigBed narrowPeak
174
tsv
75
tagAlign
50
bed broadPeak
50
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
666
Homo sapiens
Biosample type
350
cell line
289
tissue
15
in vitro differentiated cells
12
primary cell
Organ
685
pancreas
666
liver
591
connective tissue
445
adipose tissue
322
epithelium
309
heart
257
brain
195
vasculature
190
blood vessel
151
kidney
117
limb
106
artery
66
bone element
60
blood
60
bodily fluid
60
musculature of body
43
nerve
33
embryo
25
spleen
20
vein
18
ureter
12
eye
8
skeleton
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
666
AMP
Genome assembly (visualization)
558
hg19
508
GRCh38
Lab
657
AMP-T2D consortium
9
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
8
missing controlled_by
Audit category:
inconsistent control read length
8
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
files.file_type!
txt
BIOSAMPLE
ASSAY
666 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
pCHi-C
WGBS
cell line
HepG2
333
14
1
1
1
tissue
liver
121
147
2
1
1
right lobe of liver
10
3
1
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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