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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
313
ChIP-seq
20
ATAC-seq
1
snATAC-seq
Assay category
313
DNA binding
21
DNA accessibility
Target of assay
230
transcription factor
65
recombinant protein
64
histone
64
histone modification
39
broad histone mark
30
RNA binding protein
25
narrow histone mark
16
control
9
chromatin remodeller
2
other context
2
other post-translational modification
Date released
553
February, 2021
313
November, 2017
303
May, 2021
260
May, 2020
258
August, 2017
210
June, 2019
207
October, 2019
164
July, 2018
97
May, 2019
85
July, 2019
75
November, 2018
72
September, 2018
66
December, 2017
65
April, 2019
49
April, 2018
49
August, 2021
46
October, 2018
40
May, 2024
31
November, 2019
30
December, 2018
29
February, 2018
26
January, 2019
21
May, 2022
20
March, 2020
14
October, 2017
8
January, 2018
7
August, 2020
7
February, 2023
7
September, 2017
5
December, 2019
5
November, 2020
3
August, 2018
3
June, 2018
3
September, 2020
Available data
395
bam
333
bigWig
332
bed narrowPeak
327
fastq
293
bigBed narrowPeak
134
zippedFastqFolder
67
tagAlign
57
bed broadPeak
51
bigBed broadPeak
7
txt
3
tar
1
bed bed3+
Organism
334
Homo sapiens
Biosample type
247
cell line
78
tissue
9
primary cell
Organ
267
liver
66
brain
6
epithelium
6
vasculature
3
blood vessel
1
musculature of body
Project
334
AMP
Genome assembly (visualization)
281
hg19
262
GRCh38
Lab
314
AMP-T2D consortium
20
Karen Mohlke, UNC
Audit category:
1
audit script error
Audit category:
7
missing controlled_by
Audit category:
inconsistent control read length
4
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
334 results
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Clear Filters
ChIP-seq
ATAC-seq
snATAC-seq
cell line
HepG2
247
tissue
liver
20
layer of hippocampus
16
caudate nucleus
12
middle frontal area 46
11
substantia nigra
11
+ See 3 more…
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
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