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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
ATAC-seq
1
ChIP-seq
Assay category
6
DNA accessibility
1
DNA binding
Target of assay
1
histone
1
histone modification
1
narrow histone mark
Date released
5
February, 2023
1
February, 2021
1
October, 2019
Available data
2749
bam
2549
bigWig
1694
bed narrowPeak
1207
fastq
1122
tsv
983
bigBed narrowPeak
365
tagAlign
299
bed broadPeak
263
bigBed broadPeak
240
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
23
hic
22
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
4
tar
3
bed bedgraph
3
cool
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
7
Homo sapiens
Biosample type
6
tissue
1
cell line
Organ
connective tissue
4
bone element
4
skeleton
2
brain
1
liver
Project
7
AMP
Genome assembly (visualization)
7
hg19
2
GRCh38
Lab
7
AMP-T2D consortium
Audit category:
1
inconsistent replicate
audit.WARNING.category!
inconsistent control read length
files.file_type!
ibed
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
7 results
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ATAC-seq
ChIP-seq
tissue
acetabular part of hip bone
1
brain
1
ilium
1
ischium
1
medial globus pallidus
1
+ See 1 more…
cell line
HepG2
1
See all biosamples
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