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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
DNase-seq
95
ChIP-seq
2
ATAC-seq
Assay category
197
DNA accessibility
95
DNA binding
Target of assay
50
histone
50
histone modification
45
transcription factor
28
broad histone mark
22
narrow histone mark
5
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
180
June, 2019
53
November, 2017
41
August, 2017
9
November, 2018
4
October, 2017
3
October, 2019
1
March, 2019
1
November, 2020
Available data
3151
bam
2958
bigWig
1630
bed narrowPeak
1531
tsv
1296
fastq
928
bigBed narrowPeak
381
tagAlign
292
bed broadPeak
255
bigBed broadPeak
250
bed bed3+
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
286
Homo sapiens
Biosample type
208
tissue
46
cell line
37
primary cell
1
in vitro differentiated cells
Organ
78
kidney
50
liver
47
brain
46
musculature of body
36
limb
30
heart
22
epithelium
21
pancreas
18
ureter
vasculature
13
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
292
AMP
Genome assembly (visualization)
269
hg19
256
GRCh38
Lab
290
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
inconsistent control read length
2
inconsistent assembly
audit.WARNING.category!
inconsistent control read length
files.file_type!
txt
organ_slims!
mammary gland
vasculature
BIOSAMPLE
ASSAY
292 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 42 more…
cell line
HepG2
45
Panc1
1
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 13 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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